PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA000097-PA
Common NameOsI_05230
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 248aa    MW: 27089.7 Da    PI: 6.0338
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA000097-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.33.3e-1469121155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r+ +hn+ Er RR+++N+ ++ Lr llP a   + kKls  +++ ++ +YI +Lq
  BGIOSGA000097-PA  69 RKLSHNAYERDRRKQLNELYSSLRALLPDA--DHTKKLSIPTTVSRVLKYIPELQ 121
                       6889*************************7..35666***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-1666136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.95468120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.35E-1268125No hitNo description
Gene3DG3DSA:4.10.280.108.4E-1369136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-1169121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-1074126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MEQLFVDDPA FASSMSSLEA DIFSGAGQLP SSPWLDLDLD DDVQDLSMAP TTANAVSSGY  60
GSGGSGSHRK LSHNAYERDR RKQLNELYSS LRALLPDADH TKKLSIPTTV SRVLKYIPEL  120
QKQVENLERK KKELTTTSTT NCKPGVLGSQ LMSEGMAPIV SATCINDMEI MVQVSLLSNV  180
AGSVLPLSKC IKVLENEGLH FISSSTSSGF GNRTFYSIHL QRSEGTINEE CPAFCERLEK  240
VVRNKAKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.218930.0callus| leaf| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329834080.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0733850.0AK073385.1 Oryza sativa Japonica Group cDNA clone:J033041D19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612709.10.0PREDICTED: transcription factor bHLH100
TrEMBLA0A0D3EYS00.0A0A0D3EYS0_9ORYZ; Uncharacterized protein
TrEMBLA2WZ600.0A2WZ60_ORYSI; Putative uncharacterized protein
TrEMBLA0A0E0FYV70.0A0A0E0FYV7_ORYNI; Uncharacterized protein
TrEMBLA0A0E0CD210.0A0A0E0CD21_9ORYZ; Uncharacterized protein
TrEMBLI1NVB20.0I1NVB2_ORYGL; Uncharacterized protein
TrEMBLA0A0D9YK460.0A0A0D9YK46_9ORYZ; Uncharacterized protein
TrEMBLQ941Z70.0Q941Z7_ORYSJ; BHLH transcription factor-like
STRINGBGIOSGA000097-PA0.0(Oryza sativa Indica Group)
STRINGLOC_Os01g72370.10.0(Oryza sativa Japonica Group)
STRINGORGLA01G0380200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32803472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.12e-32bHLH family protein